Scaffold Ga0214170_1000550

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1000550
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12554
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013757	Metagenome / Metatranscriptome	268	Y
F015463	Metagenome / Metatranscriptome	254	Y
F023104	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100055020	F023104	N/A	MNILNLRFELANPFDRWEYFKNLGCISGMLTKNTAWELEHTYYTGMLLDADIRWTHRADHAGIDIVFGILGYGIGFRIYDTRHWDYDTNAYAKATAPPVDTYTY
Ga0214170_10005503	F015463	AGAAGG	MLNNILKWVACAVTLAGALCTAFKLDPANVYLLNLGALLYLIWAVRIRELNLIVINGALLTIYLLGLFLRG
Ga0214170_10005508	F013757	AGGAG	MFTNTIAHAKLVYNKRIQAYKLVVAFNAHKTIKKVGNTEVVKYAFPTQAKCAYVSGDLLAENLQAELTKVLPRVQEQLRTANIVFVE