Scaffold Ga0214170_1000257

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1000257
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 21325
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F005087	Metagenome / Metatranscriptome	412	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100025711	F001059	AGGA	MATYDVDALKADLPTAKDLAQFVYDKTQIALDLIGKPKEEQYLVAKNALEGKKIPSEYQTDENPYVDRKELIPVDEMKEIPPRSPDLPPETSRVHFFGATNMPHPLDPQSDRKVMINFWKYDNGMITYQISGPVEQIAIGSRINKFGQTQPEKYSWIDPRTEEMVLRRQDGSFTEKGRGIYSFCIGEKGAGIWSLIDKDIISFAEKNIANPWA
Ga0214170_10002573	F005087	AGGA	MSQFIQSANTLVSRVASWVGAIPSSTAINATAYASSTGIITTSSSLIGIVNVGDFIGFGYQYPYTVVIAISSTTVTVVDPDGIWLGASLPTPILKLPTQSSIEIQNCIQMAELKMRTVELPGLRTSPYDPNYPTFLTTDANGMAPIPADMNWPILFFQETPNSDVSPGSLAAGFGPWIIYDRVGDREIIRRRMIDQLYVKPFGVPRVIRASFSEVGPNYVFTPNPGANVTIKAYYQRTFPFLFSPTTDTNNPIVQNNAVLSTFPEGYFYGTLESYYDKNKNTTEAEKWRARLDEAYGLIEDQNFKDKWRGGDQHLTSEFQPRDYRYSFR