Scaffold Ga0214170_1000233

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1000233
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 22982
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F030331	Metagenome	185	Y
F036062	Metagenome	170	Y
F044873	Metagenome	153	Y
F079523	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100023312	F036062	AGAAGG	MALNHINVTVGTNPTLLVTLPNGVGYVAVQIQNRDSAPVYLGDSLITVASGANGGQVLAPGATVQIWMHGNESIYAISTAGTTTGAVCLVYSA
Ga0214170_100023317	F002722	AGG	MANVGRVQLRSTLYSYLTGASISGLNQVFTSFPKRINYQVNATAGQMSRAAAVIFIASERETRLAIGGATNGWKRVDFQVVLQIFHHSLQNNAEDAMADFDTLIDNIKNTLRASHNFGDSTQVNVWQGAEPVIDCLYGEPTTSDNGATETFAEIRFDVTQMIQA
Ga0214170_100023320	F030331	AGGGGG	MSRKISLPSGATVTIKDASELKVRDRNRIMLASDEGNAAQKGIAIGNALLAAIVEDWSFDLLIPSVKVESIEELSIPDYTALMKETDDLTAELFPDLKNTVENASDPKVTTENSND
Ga0214170_10002333	F079523	AGGA	VVDELWTSKQVVEYLGITINNLRQLQFRKTIVWVKREGKAVFYLADDVRAYKEKREARKK
Ga0214170_10002335	F044873	AGCAG	MIIDKDEITIADIDEAIAHLAELLKDRYGNRLTHQRKAFLMGEMDSLLDARLEALSELGNSNNREFSSRPAECSPSL