Scaffold Ga0214170_1000158

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1000158
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 29013
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (90.20%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009449	Metagenome / Metatranscriptome	317	Y
F018308	Metagenome	235	Y
F035675	Metagenome	171	Y
F068377	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100015817	F018308	N/A	MATQRREESEWRSKRQGSGIRKEGGDEFKASPTRGRIKEEKLLRKNDGNEKEINVSQNCK
Ga0214170_100015831	F068377	GGAGG	MGESIKRAPVKKLTRAQIRETLESTPIESILGTKQPLTNKQREYARKLAEGTMSKRQAYRETYNARSDYTLASDPYKLASDPRVIQEVNAYKLAIEAEKLRTPRELKALLIHQLVKHSIDEDFPPAQRMKALELIGKLYDVGAFMERKETTVIHQKSGDIKAQLLERIKAVVDVDAKPARSGGRSLLEEISEGRDPTHAPPPAPASEAGGDPTHTIPLIQSLENTIDPPQLVDLEPPPSLSETK
Ga0214170_100015849	F035675	GGAGG	MNKGLLDDVPLCNKERDQAWEAFIKRKDVKKMFLDDKEFSFPLNGAYYDLWSICWAKAWDKGFHAAIEKLKDKNHD
Ga0214170_10001589	F009449	AGGAG	MKDDDLKQDKKLIKKAFSMHDKQEHPGKKTNLSKLKKGGPTGKDMRAVGRNMARARNQRG