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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020731 Open in IMG/M |
| Scaffold ID | Ga0214170_1000096 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37273 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (81.40%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053029 | Metagenome | 141 | Y |
| F071904 | Metagenome | 121 | Y |
| F086508 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214170_100009638 | F071904 | GGAGG | MTVDYSRVAATDVRNVIWAQLKSYGILNASDYTPQGANGFTSPLCPIIPSQQVPEFNNLLPGKAYITYDIVQRNTGVQWWISEETMVLQIISRSNAQILTISNFLTDFVRRYELSAADINNYAENVSSPFKFLYCKLEGANPVQPFQDEGGFMSGDFSFMYTYTRSVDEGPNYTGRYV |
| Ga0214170_100009641 | F053029 | AGGGGG | LQTINTNSQEKIYLEVYNNGSLSQADSLPTLSIYNADSDIYNPGGVLSRNPLYTNLNAYDEPATGVYSYQLTPNITSSNMVLEVVWTYVQNGVTVNTTDYYAIETPYASIPETMDFLGYSGTVGAANYLDPNTIIKTEKMARTIIEGYTGIKFYKYYGGQEIYGIGANTIQLTEKMLSLDQIYENEILVYDQTQTPVYDTFGYNTEISPSGYQIRIWFPGWQDGWNNEMDPEIYEYGRFRDNYLYRFVGQIGYNYVPEDIKLASMLLQQDIMSNDYNWRNKYLSQVNLSEISFKMAGGAFNGTGNVMVDNILDQYRKANIVII |
| Ga0214170_100009642 | F086508 | GAGG | MSFTDLKITELRKAADSFGIDTSEFKTKPEIIAALEEEGISWQMYAKFDNAEKQDIEVPEIEKKKRESKIMGKTANQVLVKMERMNHSYQVGVYTFSQEHPFIAMSETEAQKIFDTEDGFRLATPREAQEYYA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |