Scaffold Ga0214170

Basic Information
Taxon OID	3300020731 Open in IMG/M
Scaffold ID	Ga0214170_1000024 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020731 Open in IMG/M

Scaffold ID

Ga0214170_1000024 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	77733
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (6.90%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

77733

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (6.90%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F026883	Metagenome / Metatranscriptome	196	Y
F032658	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100002410	F032658	N/A	MNRSGSLRTLSTNEEYWLNKNKIGKKVALYTHDDMDGIFCAILMKKWLLNNGFEIVKYGIVNYNEGWKYTTLDPSLINIVLDFANMPGDDRDQYIDYYLDHHGLFNDEDLNRYKNLPVKKLNTSSAYEALCIVLNIPKDELVLSLIDMVDGAKYEEYNIDWQRLLNFNLSDIKKSEKKRLEFTASFNQYLKRGDHKTLISVIANCKDVSIYSIFNTMKRVYPEHNFYPRNNHKKNFISDSEWRINTMKTKVREGDAHRITLNSQEEFLSKFIKDGLIDIKGYTKIGNLVFIPNDTWANALRARAIIEKDFLDGKLDEEPNFILLQYGDTLQVCSYKKINEIDNLPSYKDGSIINDLGKYMNNLLANFKLHLGYDDPLTNIGQDEITVSGGHGGIGSISNINGVCKKEKYSDLKFIDMIKNKIINDLSNIKFNMNIKWFEKPSYDKIEPKMDNKVIFSEYVTMLNEKGEITKKD
Ga0214170_100002413	F002045	N/A	MNFFCVYVKTRKKIDKYIKINKVKNKYIIDIKKIIEEEELSQDEDKTYLKILIFNKIQQAIDKKKDIYYIPDFDDNFSIEKLLNLKKILGGQNNFNVLVFYNEFRKNPEIIDDVFGNLSKFNNSQIVRDY
Ga0214170_100002482	F026883	GGAG	MLQKHFNTQEEAMDKWPFWMLEENIKIVNQIIEEEEKHRKTEEEGQKASMPDTSSMMKNASSMTNNMPKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214170_1000024

Overview

Ecosystem & Geography

Associated Families

Sequences