NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214251_1013987

Scaffold Ga0214251_1013987


Overview

Basic Information
Taxon OID3300020729 Open in IMG/M
Scaffold IDGa0214251_1013987 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1521
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012769Metagenome / Metatranscriptome277N
F014232Metagenome / Metatranscriptome264N

Sequences

Protein IDFamilyRBSSequence
Ga0214251_10139872F014232AGGMSQEKPEISSEVITKADTSEDCGHEPHGCTCPPSAEYEKSIEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKIDPGWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCRQCSEVKRRYQEMLDATSSEESNSE
Ga0214251_10139873F012769N/AMQFQYPKFKVKELVKEKYDPILKEEYQEETAIKIFKASIEVIRQSGNKLTEQHYLPYSPEEKEDAIKEVIVQISEWKNRILNRRQKEKITRIDRALSKKILDMLAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH
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