NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214202_1004983

Scaffold Ga0214202_1004983


Overview

Basic Information
Taxon OID3300020728 Open in IMG/M
Scaffold IDGa0214202_1004983 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3011
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014232Metagenome / Metatranscriptome264N
F028152Metagenome / Metatranscriptome192N
F054590Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0214202_10049832F014232N/AMSQEKSKIVDEATTKEDTLEGSSHKSHECTCTPSAEYEKATEIGSLTNLIRLVYSIPLVNGLISYKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIRLKAIHPDWDMYLEDSKNHHFCKCLPCSEVKRRYQEMLDATSSEESSSEEENKT
Ga0214202_10049833F028152N/AMDNIGEAIRLVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLTVINEIERMQSETESLCDYLFNHYFTSEYAKEKRASLVLQPGPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPTFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKERINFGVTEVRKISPYEYKDPREVNFKIPKIKNETKVVTRVRNPTYLDFLYRP
Ga0214202_10049834F054590N/AMIENIAELRKIVGFTKLHRLANYKQRRQVADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKQKRNLIHPWTI
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