Scaffold Ga0214202_1002819

Overview

Basic Information

• Taxon OID: 3300020728
• Scaffold ID: Ga0214202_1002819
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4716
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F046173	Metagenome / Metatranscriptome	151	N
F047014	Metagenome / Metatranscriptome	150	Y
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N
F062460	Metagenome / Metatranscriptome	130	N
F065414	Metagenome / Metatranscriptome	127	N
F069678	Metagenome / Metatranscriptome	123	N
F073069	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214202_100281910	F062460	N/A	MNLEKSIIEAVTTAVREIRQESCIEKQVKSLMKIYDAIVVKDNEISTESSLKTTRKRKRSISHE
Ga0214202_100281911	F069678	N/A	MSNQEQLAEGTSLTETLVDTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDMENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENEHLDDRINNGTAHTDR
Ga0214202_100281913	F065414	N/A	MSEPEVVINLNNLEELNIQKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKKKDNKEKFKLIFKVLKRIKAMEPDNHLNLASYIVSRNGV
Ga0214202_10028192	F047014	AGG	MSIQLNEARDQWIRYLINSTIAWVEAKRDKEAKHRCAKIINIIQKLKKLDQQWYLGNSVPERNLIPIQHNGQSSYHTLQGA
Ga0214202_10028193	F073069	N/A	MTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFVERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSITKITKEKVEVANKQLNKDMSKETRSILKENFILMYEINIKLVDLKLMYEYIITKMISAEITEGMLTEARKRKWTRFY
Ga0214202_10028194	F046173	GAG	MLSLKDREIYEIIIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEIDTFYKEKLIGRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVIEIDSKLINLTKLLNYITEKQKEQE
Ga0214202_10028195	F041008	N/A	MPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVESVMEHLFEYYLTSEYSQNLRIPLKGAKPVTNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTIERELRIVGDHNMVTLYKIDNELLNLRMMYEYLIENFNPHVVTKG
Ga0214202_10028196	F054566	AGG	MEKDKEKVELILDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKNKTNK
Ga0214202_10028197	F055421	N/A	MEEFTNPYKETNIEIHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRGLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIVCNNIIEGVKMVVLLHFMIVAICLPNGEEIESNLIKLIIGY