Scaffold Ga0214202

Basic Information
Taxon OID	3300020728 Open in IMG/M
Scaffold ID	Ga0214202_1002652 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020728 Open in IMG/M

Scaffold ID

Ga0214202_1002652 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4931
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4931

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F061527	Metagenome / Metatranscriptome	131	N
F066480	Metagenome / Metatranscriptome	126	N
F076862	Metagenome / Metatranscriptome	117	N
F086589	Metagenome / Metatranscriptome	110	N
F102512	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214202_100265211	F045530	GAG	MIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKLDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRGHVDEEGPPRKIFSGIYTRQKIQLN
Ga0214202_100265212	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDIRHSLNEIGQN
Ga0214202_10026523	F102512	N/A	MSVRKLIDEALVTYIRREMCDNIVMLCTEMKTFAENLEKFPVEKLLLLKTEIIRVHNQIFGMMEEVKESFLQFV
Ga0214202_10026526	F076862	N/A	MSDPSHNSTVEEITKGIRTLDIENQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLELNSQRTHTIARQYGRKHPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW
Ga0214202_10026527	F066480	N/A	MDIFKEKENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEKVLQELLKYILERMMSCLDTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
Ga0214202_10026528	F061527	N/A	MSNYFEQAFSEILSAIKELTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNPKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214202_1002652

Overview

Ecosystem & Geography

Associated Families

Sequences