NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214202_1002142

Scaffold Ga0214202_1002142


Overview

Basic Information
Taxon OID3300020728 Open in IMG/M
Scaffold IDGa0214202_1002142 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5749
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016494Metagenome / Metatranscriptome246N
F023520Metagenome / Metatranscriptome209N
F039010Metagenome / Metatranscriptome164N
F055419Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0214202_100214214F055419GAGMTETLAPHERLALYNLTDEEIEKIEEELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNVQH
Ga0214202_10021422F039010N/AMKFSNLGMHPERNYEMEENEDLDASGIDSHRSDDSNEVRCRFHDFMSHEIETLDQILVEMISVAENISENTIISQLKRCFEYIDNMMIYVNQFINQAQSVKMKHFIRFYSLYDGIRHSMMRTLTIINNLRKRNLFQMVPLVKDLILDLDEIKVLVSRTTLEQVKEVLEGYRIKRSYIRRKIENFI
Ga0214202_10021425F016494N/AMSQKDNNSEEVTIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKSRIKRIDPSWKFENTDTSYVFEILKLLDAVNIEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVESIIKFLYPTLNTQLS
Ga0214202_10021428F023520N/AMATTKERKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLINKILEGVDSIDTSKEWSHLDNKSKFIEIKLAMTELRLCYPLWKLNRYDIEKYSTCLCPNCDSIDIAGGKTLEKLGGLTLEL
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