NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214246_1028744

Scaffold Ga0214246_1028744


Overview

Basic Information
Taxon OID3300020727 Open in IMG/M
Scaffold IDGa0214246_1028744 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017597Metagenome / Metatranscriptome239N
F019778Metagenome / Metatranscriptome227N
F024477Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214246_10287441F019778N/AMSSNVASQAELIFLYIGESRLIKRISNDILLVLHEDAKSINTIKLKELLQFKIRGRLSYLNHLAMSTVKEEAKYALALYTQLDSLLAILSSDDKVTAIKLITKICSAYRASREAVQSTAQTSNNIEKMEIG
Ga0214246_10287442F017597N/AMKKIFGSEKLSIKLAIKRKELIKIVKSSKSTLIKTEMITRILITALKAKQVIAIRFQVNRTNNLQMWGQKF
Ga0214246_10287443F024477N/AKNSSKASSFELLIKNITLIEKVEDFYKELDQITSYRFKCHGKLDPDIYFMKDIIKIRLMELKRLQTQKTNELIKLSQ
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