Basic Information | |
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Taxon OID | 3300020727 Open in IMG/M |
Scaffold ID | Ga0214246_1000459 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10978 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (72.22%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005167 | Metagenome / Metatranscriptome | 410 | Y |
F009741 | Metagenome / Metatranscriptome | 313 | Y |
F019092 | Metagenome / Metatranscriptome | 231 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214246_10004592 | F009741 | AGGA | MTQTFDGNYDYTKPWRAPVQPDQVAKRWSYNGPWSSNMERLTSQALMVMGIPGKDIQTMVRPPLPQIRLFPDRYGYGDNRPQPGIEDIVSVDRNYQEPRISWYSGSPAGYSGSSRNDLGS |
Ga0214246_10004595 | F005167 | AGG | MAVNSSRSMNQSLDAGATDGKYRKARPDTEVIPGSGNEQTMADRQTLNPFWGYDFITSEYPNKVNPGK |
Ga0214246_10004597 | F019092 | GGAG | MANVPILGERQQQPTDPVFRLLHCLVCDTLEELPPYDGPSDQDTLLEIACEVHVFPSGEPHKGKLYVFPLKYWAKSETKREIIRQIKGGGSKGLAEIDETYYDSRSTFMDDAMACYRQHNKPTTGCDDWHAKQKMLVPKTAKERKAEGMARYQDEAGPKTYLCDFCPVAVAVNTRKQKLLGGLA |
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