Scaffold Ga0214246_1000459

Overview

Basic Information

• Taxon OID: 3300020727
• Scaffold ID: Ga0214246_1000459
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10978
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F009741	Metagenome / Metatranscriptome	313	Y
F019092	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214246_10004592	F009741	AGGA	MTQTFDGNYDYTKPWRAPVQPDQVAKRWSYNGPWSSNMERLTSQALMVMGIPGKDIQTMVRPPLPQIRLFPDRYGYGDNRPQPGIEDIVSVDRNYQEPRISWYSGSPAGYSGSSRNDLGS
Ga0214246_10004595	F005167	AGG	MAVNSSRSMNQSLDAGATDGKYRKARPDTEVIPGSGNEQTMADRQTLNPFWGYDFITSEYPNKVNPGK
Ga0214246_10004597	F019092	GGAG	MANVPILGERQQQPTDPVFRLLHCLVCDTLEELPPYDGPSDQDTLLEIACEVHVFPSGEPHKGKLYVFPLKYWAKSETKREIIRQIKGGGSKGLAEIDETYYDSRSTFMDDAMACYRQHNKPTTGCDDWHAKQKMLVPKTAKERKAEGMARYQDEAGPKTYLCDFCPVAVAVNTRKQKLLGGLA