Basic Information | |
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Taxon OID | 3300020726 Open in IMG/M |
Scaffold ID | Ga0214220_1008744 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 hypolimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1758 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015302 | Metagenome | 255 | Y |
F034448 | Metagenome | 174 | Y |
F040990 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214220_10087442 | F034448 | N/A | MHVNTWTLPRPPEEALNQCHAVYINDPVFRMWAMKKWCREQNLSLIWSELVDTTDVSAFFDEACAFYFIDPADALMFRLRFI |
Ga0214220_10087443 | F015302 | GGTGG | VSKDEYYADTAARLDTIIGGDTQHFLRLQRVKNEYDELARAVPVGQGFLTFDDYVREYYGVKLQFDGDNVTLAYSIVDEKKHLMFILKFNR |
Ga0214220_10087444 | F040990 | N/A | MNYYYEIDSKYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSTRVWLENANGVYMIKPAWDAKRLRVDKHEFTIVKLKAKTIKWWSGE |
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