NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214220_1001325

Scaffold Ga0214220_1001325


Overview

Basic Information
Taxon OID3300020726 Open in IMG/M
Scaffold IDGa0214220_1001325 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6215
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016247Metagenome248Y
F048757Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0214220_100132511F016247AGGAMNFIVEHKYKGKYVMETITGVEDLDTSIYQDLLGIWVCDSMEETLIMEKQLQEMRSARSSQSS
Ga0214220_10013254F048757GGAGVNLKQLLKSAGISNNIIKEVERKSKMTTAMQEVEHQEKAAAMAKMMLNDVMPHLHGALNKTPPSKPKKTIIIPD

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