NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214220_1000846

Scaffold Ga0214220_1000846


Overview

Basic Information
Taxon OID3300020726 Open in IMG/M
Scaffold IDGa0214220_1000846 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8752
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026194Metagenome198Y
F035995Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0214220_100084617F026194AGGAGMGYLNFPPNLKDIFDDIYARVRKLETAQRFSVPIVATDPTNRRNGDMWINSTTNTLKVVDSVGTIRTVTIV
Ga0214220_10008463F035995AGGMSIVTPVQVEARLKDLSKLIDEAHDDLVDSEMLYHAAKATYEVAMAKSRIELAGKSDAGGRNRTVGEREDLALLANEERHMKVAECEAIVKANRANVARLRVQVDIARSIGTSVRTGMDA

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