Basic Information | |
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Taxon OID | 3300020719 Open in IMG/M |
Scaffold ID | Ga0214257_1003766 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 18AUG2009 hypolimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2592 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F051689 | Metagenome | 143 | Y |
F074375 | Metagenome | 119 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214257_10037664 | F051689 | AGGA | MTMSALQRLDALARIFVSMCASLFPFMKAGGILFLCIEKIHSMLHSASEIMRWGSLINCSGEAAETAHKINVKGPGSNVNQRDSALGTLMTHARRKETTRLMGGAIQGNNT |
Ga0214257_10037665 | F074375 | GGAGG | MVGAAATRLKQRLDLIYGNRSDDEGRKFSGAHETVLPLCSAARSIFNQLRKSTTVKASKKRVSSGAASKINGRPDGRITGMDMRHILLLLPFLLFDLLVDVVEEHNAQHGTGHVSPASDLIAWVLVLLEWYRLYRCHRFHGSMLHCTMMHNMT |
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