Scaffold Ga0214178_1019844

Overview

Basic Information

• Taxon OID: 3300020718
• Scaffold ID: Ga0214178_1019844
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 895
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004924	Metagenome / Metatranscriptome	418	Y
F036063	Metagenome	170	Y
F091089	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_10198441	F004924	AGGAG	MKDTILAKLAEVEAMLLTATCDGVQLTELECFNELENAMSTLLQTVDYYVD
Ga0214178_10198442	F036063	AGGA	MRKLSPAHKLQINMLVLKTTQDYIDFSTTQHGVNFPITVDNLQFHTLDIQYNINALVAFNKDNNVQKLHDSIMQQDTFVREYYIEVLQYIESNNLIPSNAFCCV
Ga0214178_10198443	F091089	N/A	LAKAKLVYNKKIQAYKLVVAFNVHTTTREDKDGNEKVVHLFPVQSKCAYVSGDLLKSNIKNELAVALKHAKATARTDNIVFVG