NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214178_1007027

Scaffold Ga0214178_1007027


Overview

Basic Information
Taxon OID3300020718 Open in IMG/M
Scaffold IDGa0214178_1007027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026810Metagenome / Metatranscriptome196N
F031767Metagenome / Metatranscriptome181N
F033695Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0214178_10070271F026810N/AMAASINRRILTMTKEEHVDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSISSTEFEKVKRKVNDPVLVNKLG
Ga0214178_10070272F033695N/AMEGFNQEFKLAMEEVQELTKRAAICSSQEHNKPMKIDIKAVQYYRLEVSKRIDYIQDMMEIFPFKTDIFYLWKIHQNILKLLSMILRNEDQKDRCQKLNSYVKVLEKFKNETDYSYWKDYISIHENKILEGS
Ga0214178_10070273F031767GGAMNNNPINQKKIIVKRLERKPRQNYVKTLASLKGIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKKDVSTNKNS
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