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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020718 Open in IMG/M |
| Scaffold ID | Ga0214178_1005061 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2234 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016494 | Metagenome / Metatranscriptome | 246 | N |
| F019949 | Metagenome / Metatranscriptome | 226 | N |
| F024962 | Metagenome / Metatranscriptome | 203 | N |
| F031075 | Metagenome / Metatranscriptome | 183 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214178_10050611 | F024962 | AGAAG | MKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSAENITGLDHLLSSKIIDTLEIYLEALEETNINERQRKLYYVDSFAAVWNHRKIE |
| Ga0214178_10050612 | F031075 | N/A | MSQEKSTSVSETANRKENSEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIREIDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK |
| Ga0214178_10050613 | F016494 | N/A | MSQKDNNSEEVTIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKSRIKRIDPSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNAQLS |
| Ga0214178_10050615 | F019949 | N/A | LRFADDLLYNNSTAEDEANKEILREELEKYIDKSVVFQLAFNTFKIEMQEIKLLRLIEKLLHTVDKMHNLSPLQKARKFSKVYELKQKIIQINSNWKISDSFHLKKYKILTLLDKINVKEEYNSVANEEIYQQLINEVETAKGTNSTWQLDKELIIIKKIE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |