Scaffold Ga0214178_1004128

Overview

Basic Information

• Taxon OID: 3300020718
• Scaffold ID: Ga0214178_1004128
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2586
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057882	Metagenome / Metatranscriptome	135	N
F063335	Metagenome / Metatranscriptome	129	N
F101040	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_10041283	F057882	N/A	MSCENNLKEFDHPEYGILDPSQVRELRDELTRCFVDYIGGLSKHLREKEAVDIEEDRVTKFHYLRVCATIQNLNKIDPEWCLRYSAPDDECLKIKLHDCRCCYHTCQELSRVIQSPKSNSNKSSQTEDRELTQK
Ga0214178_10041284	F101040	GAG	MNTEFFRARLEEVRSNLELTRVDKRKTLENLLERNLTQELKEVLRNNLSLLIQAEEKYLELERQYEILIRCGRH
Ga0214178_10041287	F063335	GAG	MERQKVEELQKVREERLALERAVMQICSSSPHPEWLGLTLIKNYHFIEAINKLVRKEKALAVETKVETKEHEENK