Scaffold Ga0214178_1001898

Overview

Basic Information

• Taxon OID: 3300020718
• Scaffold ID: Ga0214178_1001898
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4601
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F038078	Metagenome / Metatranscriptome	166	N
F045559	Metagenome / Metatranscriptome	152	N
F057099	Metagenome / Metatranscriptome	136	N
F065414	Metagenome / Metatranscriptome	127	N
F073066	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_100189810	F038078	N/A	MAEKYEKCTVEMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKTKVLANSEYWSLVDYTGMTIGRIFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSTEEGREDTISSSISKLNI
Ga0214178_100189812	F045559	N/A	MDLTFENIKQTTQASELRKDVAKENYKYVKLTGISNVINSLCGTDFSNESLMHHRMNRIHVLKWKIKDIDPNWHLTDQVAIMEHQILDLLDGIDHMKPWNEIGNKLKYMALFSIIENLKKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDEYS
Ga0214178_10018983	F065414	N/A	MSEPEVVINLNNLEELNIHKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKERFKIIFKVLKRIKAMEPDNHLNLASYIVSRNGV
Ga0214178_10018984	F057099	N/A	MKILRKDWELINKIAWNILNLKLEDSKKTLNLESSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNSLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKLPELPDLIEYR
Ga0214178_10018985	F073066	N/A	MEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRHSE
Ga0214178_10018988	F026798	N/A	MDKSKEKLISHNCTEESSKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKLVNSLDVKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPSNNTLPPYKSVRLENKLLKKGLKKKCSLYPSKEKIIENWYKLMKVQESL