Scaffold Ga0214178_1000351

Overview

Basic Information

• Taxon OID: 3300020718
• Scaffold ID: Ga0214178_1000351
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14151
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027395	Metagenome	194	N
F067353	Metagenome	125	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_100035119	F027395	AGGAG	MSYNVIEGSTIQFYTSQPFTSISGTVVNPDKVNFSYSIQGQTEQTFTWVNPTGDPTNTIHQGSQGTGYFYANVSTVGQPGTWNWQWYGYPSSGADTTATQVAAQGTVIVSASDL
Ga0214178_10003512	F067353	AGGA	MSKNADRMNKDRQRALTTLNALNETLINDLVRRASVRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKRVADPIYDSVKELAVMLSNIAELAQRIDERVAFITDTKSSIKELVVVYCEACQREVAGTVSDRIRSGYCQACYQAWRREGMPGRYQFELQRREELAESLEN
Ga0214178_10003517	F096503	N/A	VLGKIPAPEEAQMFKLNYRTGRKLVWGSAAIVFMYVDLTAQGGISFWAAVYGLGTAVVVATLLAFITK