Scaffold Ga0214207_1005122

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1005122
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2060
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F063276	Metagenome	129	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10051221	F063276	AGGA	MQNSTIRQNLDAVVALIFAVCAVAFAIWWNLDHPHITVKYDCSIAEISPDYPIQVKEACRKLRAQNN
Ga0214207_10051222	F070810	N/A	MENCKVSKAWEIKLLWNSQNKYWWNEVCADVVEVFGLPGERFTSHPHEDCMLFRFKSKKDYHLCKILLSDKI
Ga0214207_10051224	F026556	GGAGG	MTSALIKLLFGIALILIAVIFGPIVGIWSLNTLFPTLAIPYTWQTWLAFNCLFGGSIAARIKK
Ga0214207_10051227	F009462	AGGAG	MELHESVRGTFKTMVIKEHEGFRLTLNKHEVLSPKGLFSIDMVQESLKDGEVVESQTYNFFMTKEECQTLAYGLTA