Scaffold Ga0214207_1000973

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000973
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7442
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F018323	Metagenome / Metatranscriptome	235	N
F022147	Metagenome / Metatranscriptome	215	N
F023520	Metagenome / Metatranscriptome	209	N
F027744	Metagenome / Metatranscriptome	193	N
F031075	Metagenome / Metatranscriptome	183	N
F050893	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10009731	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKYRVQKSKDIVTLEKVSIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQE
Ga0214207_100097310	F018323	GAG	MCNNKINDEVVELIKSLEENSVDLTSAMDTVKVLDELELPLFEHILINQICKDLNAISTEINHDQEDERVFRKIFHKVRALKLKNPEWKFKHRAKKSTYSRKRMIEEERLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRTWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL
Ga0214207_100097312	F050893	N/A	MEEIIIKIGEIERLVMLLLIQKEKLEEREEADPSKGSIHKTLLAIKQLNRKLEIIPGNKKLRTSEELEMKVRKK
Ga0214207_100097315	F027744	N/A	MNSIVRESKNNFYEPDVGNTGQRVNPELPLTIAERDAVARGVVRFNNQRQYRKRRLDNLLEALDTRHGTVYDSGNVEILIEVFNTVGLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL
Ga0214207_100097317	F023520	N/A	MATAKERKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLINKILEGVDSIDTSKEWSHQDNKSKFIEIKQAMTELRLCYPLWKLNRYDIEKYSTCLCPNCDSIDIAGGKTLEKLGGLTLEL
Ga0214207_100097319	F031075	N/A	KSTSVSETVNRKENPEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIRKIDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK
Ga0214207_10009732	F016243	N/A	MNEAQITKIVMRLATRSKWSIKARRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKLQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYKFLIENCENE