Scaffold Ga0214207_1000499

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000499
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11702
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F031339	Metagenome	182	N
F046794	Metagenome	150	N
F074308	Metagenome	119	N
F104339	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_100049911	F006255	GGGGG	MGELHQLMLEHEEFLESALDDMEFGGELSQEQVDCIRQACGKPRNSQVNQVLRDVINDFGTIFGGKNASI
Ga0214207_100049915	F031339	AGG	MGMLEKYIVGATGVGYLITGILQFNKGATANAMIWIGYAIGQTGLWLNLK
Ga0214207_100049917	F104339	GAG	MNDYADHILKLNRLTKSFLHSILKNRNTEAYLIACEITETAQELETWASKNSVH
Ga0214207_100049922	F074308	AGGA	MGKMDSMKGAKGATGEKLPKGATASDMSGERKQKLVGGVAMGKMDAMGSRPLSHAGNFEGKLGELNDGNMGEREVYSHVRTAHAQDGC
Ga0214207_10004997	F046794	AGG	MTCKACKFFVFNQNDMMGACKLNPIVVNKLPQDWCGQEIPAEYEATVIPDAPVLEVVYDINTDEVKPKRGRKSANKGQQ