NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214207_1000120

Scaffold Ga0214207_1000120


Overview

Basic Information
Taxon OID3300020716 Open in IMG/M
Scaffold IDGa0214207_1000120 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)25379
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (71.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F032649Metagenome / Metatranscriptome179Y
F033308Metagenome177Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214207_10001201F070810N/AIKMETTNTVWELRIPWHNQNNNWWNETCADVVEVFGLPGERYTYHPRYEDMAFYFNSKKDYQLCKILLSDRI
Ga0214207_10001202F063276AGGAMQNSTFRQNLDFFTVMLLGIVVVAFAIYWNYTHPHVVVKYDCSISEISPDYPIPVKEACRKLRAENILQSPK
Ga0214207_100012031F032649GGAGMDERIEKAFAVANYMATLSNQRRIILEEYNQKLIYYINGATFKITPELINFTKTVLDLGYSEDVAFLDSNNLPVIVNDVQKFFDDISLKFFESTNDYAAKYAELRSKRKISDIVEL
Ga0214207_10001205F002977N/AMKIQIPAEGIMQAHDWGKSKVYRVACNCGASEHDHHVWVEADNRGEVSLTVYTTVRSNWWSKTRWHAIWTLLTKGYVDTESTLIMNKQQAFNYAHTLLSAVEDVEQFKEEQDAER
Ga0214207_10001206F033308GAGGMQNAKQITDELIYRMKTTDLNKFEIKREVGDNWIPNGTVPFDISASKGIATFTVWAESIQDAEDQVTQFLEKDEDE
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