NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214207_1000098

Scaffold Ga0214207_1000098


Overview

Basic Information
Taxon OID3300020716 Open in IMG/M
Scaffold IDGa0214207_1000098 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)27730
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (78.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015062Metagenome257Y
F016247Metagenome248Y
F016499Metagenome / Metatranscriptome246Y
F048757Metagenome147N
F051683Metagenome143Y
F053035Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0214207_100009842F015062N/AMKKTIRTKHRIKASTPRLSDEDPDPIEQDDMESISAQLIEGWLPWDPEDINDIRKLIENNMPQKQQFVLEAFLDGLNYNDLHVTEKYWRYHFAKGVEFIKKELGL
Ga0214207_100009843F016247AGGAMNFIIEHKVKGHYVMETLRGVEDIDTSMYKDIMGIWVTDSEEETQVMEKELKEMRHARSSESA
Ga0214207_100009846F051683GGAMMIEIDDDFTDEITAANLAQSYVSIKDMMKNGTHWHEDDIVAWEELLPAIMIVGSWYSIDFPSEIKKAKKAGKKK
Ga0214207_100009849F048757GAGMNLKQLLKRAGVSSDIIAEVERKAKRTTAEQEIEHQEKAAAMAKMMLNDMMPHLHSALNKTPPPKPKKTIIVPDDM
Ga0214207_100009850F053035AGGAGMVSPFELRFSIFNAAKDLMIKQHEANMAAWEVLNKTTKEAAELAPSFPTTEEIIDKAIEINTFISGQTTKELASVAKKLAGVSVIF
Ga0214207_100009853F016499AGGTGGVAAKKAPPNKKYFTQEMADTILEMGKQGASQKAMYAAIGISKATAARLKKEDPFFAETLDMATVYGQAYWENLMLANIENKAFNSRVAEICLRGQYPEEYRERMDIKQDVKQEITVDFNKEIASLISALKS
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