Scaffold Ga0214207_1000010

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000010
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 66312
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (86.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F002405	Metagenome	562	Y
F012448	Metagenome / Metatranscriptome	280	Y
F019309	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_100001038	F002405	GAG	MIIEPEWVFPFEGMDVGDSFFIPTLRFAELIYALDCGAKRAKIRVKSYVSIKDDCIGVRTWRIR
Ga0214207_100001041	F000843	N/A	MALYQITPNQLPKVWPIVAPLLQKAIDVDPDSNTIEQTEYSVRTGKTFLLIWDEPEVGITGACTVEFFDYPRERVAHVNLMGGKGIVRQHVFEEAKNWMRLHGATKAQCWTKGSLVKMYEKMGMENTHQVMRIKL
Ga0214207_100001043	F012448	AGGA	MDIEKLRKTHHTTPVELDYVEFIEADDIWIKAYSVALTNTIITQHVHVHDHITLVSGGSIEAWQDGECLGQFNAPAVIRIAAGKKHAFKALTDNVALCCIHNLRGTGLESPEIEGVVHANPKR
Ga0214207_100001087	F019309	N/A	MSYETSKLTELVAQKVDEKVRQLEEALGSRSAKDYAEYCAMCGEITGLLTVRRYITDLTKQIEESDD