Scaffold Ga0214255_1006359

Overview

Basic Information

• Taxon OID: 3300020712
• Scaffold ID: Ga0214255_1006359
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1700
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010226	Metagenome / Metatranscriptome	306	Y
F021290	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214255_10063592	F021290	N/A	MRAREFICELKGHRGKGRSAPAPEFERAHPGIIGPSGRGDMYIGRYYDHYRISSLAGMHPDDIANIDEVSFFGNMPIFSGYTQPERDKLKAIMKKLGMKPKDYISTGSHEPDDTNHTSPVTGFKGYK
Ga0214255_10063593	F010226	AGG	MAIQVINAAGNVLWTTDKAEIDSNSADVTYQVFATGLGNAAPVGNLYANVVAVPNGTVRDIYVGSGNYLIMTGTTFTARALGTQSSAQHSVFNSSGV