Scaffold Ga0214198_1003382

Overview

Basic Information

• Taxon OID: 3300020710
• Scaffold ID: Ga0214198_1003382
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051643	Metagenome / Metatranscriptome	143	N
F076788	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214198_10033822	F076788	AGG	MPIVSLPNNQSAVIASKEEITERTSRAISRAYMKAAGTAAKLASLGFNDRDPKTWGIFADISDEDQSNLDGYQAQLIVGLVKQWTLGDLPTLESALDLPKATFDALSEACGVEFNGSTVNTEPDVDPKAPTAD
Ga0214198_10033825	F051643	N/A	SRSTVRSQFISYLEGADIPFLSKVMTFPAKFTPEGEFYQGEDPGHQQGCIVFPYIENQSEKRIELTGPTGGGKEITYEVVFTCIFRSNKRKTEDAGIDAETFLDGFTNAIRASKNCGGNGPIFQWGEGGTSGGSDIEVTSYYPRQINGAASATQVVSTVRVRIIEITNPNSYVS