Scaffold Ga0214198_1000329

Overview

Basic Information

• Taxon OID: 3300020710
• Scaffold ID: Ga0214198_1000329
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10943
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (91.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F052985	Metagenome / Metatranscriptome	141	Y
F053761	Metagenome / Metatranscriptome	140	Y
F054522	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214198_100032914	F052985	GGAGG	MAKHPPVGSANWHSLFADDECKVWQDGNDDIFFKVVIKGKRPKYFYNETAWSDVPRYIVDETGHMHYWSLFQ
Ga0214198_100032925	F000684	N/A	MSLNGYTYQIGDLFTTSKTGITGRIRDFTPINNKLTRVGLTLANGSYRFAMVKTSK
Ga0214198_10003296	F053761	AGGAGG	MGARTNYTIIATENPAQNINVYAHWDGDDSVAIMQNAIKAAMPRIQMGDLSYATRILIDQLTKHGRDSETGYGLYISEDILTEEQYERKVIDLVKQTVRVGSMQFQLDQFVEVLT
Ga0214198_10003298	F054522	AGAAGG	MAVITLQVPNPAQMGYGLGKAMQYGVEYEVLNDLQVELTSADEMKLAKMIVAFRGKLLDVSTTKQVSGDLPKYEVQYARTNRPIQTRKK