NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214198_1000329

Scaffold Ga0214198_1000329


Overview

Basic Information
Taxon OID3300020710 Open in IMG/M
Scaffold IDGa0214198_1000329 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)10943
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (91.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F052985Metagenome / Metatranscriptome141Y
F053761Metagenome / Metatranscriptome140Y
F054522Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0214198_100032914F052985GGAGGMAKHPPVGSANWHSLFADDECKVWQDGNDDIFFKVVIKGKRPKYFYNETAWSDVPRYIVDETGHMHYWSLFQ
Ga0214198_100032925F000684N/AMSLNGYTYQIGDLFTTSKTGITGRIRDFTPINNKLTRVGLTLANGSYRFAMVKTSK
Ga0214198_10003296F053761AGGAGGMGARTNYTIIATENPAQNINVYAHWDGDDSVAIMQNAIKAAMPRIQMGDLSYATRILIDQLTKHGRDSETGYGLYISEDILTEEQYERKVIDLVKQTVRVGSMQFQLDQFVEVLT
Ga0214198_10003298F054522AGAAGGMAVITLQVPNPAQMGYGLGKAMQYGVEYEVLNDLQVELTSADEMKLAKMIVAFRGKLLDVSTTKQVSGDLPKYEVQYARTNRPIQTRKK

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