NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214198_1000149

Scaffold Ga0214198_1000149


Overview

Basic Information
Taxon OID3300020710 Open in IMG/M
Scaffold IDGa0214198_1000149 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)18510
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000684Metagenome / Metatranscriptome938Y
F019324Metagenome / Metatranscriptome230Y
F045504Metagenome152Y
F095359Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0214198_100014918F019324AGGAGMLGYEVYDQEEMVTAVQSALTTVSPDDDPWLYNNLQMTISFLQGLWAEGYFD
Ga0214198_100014935F095359GAGGMEIIIGGLGQTISAYCPVCSEKMSHWCNATLGKGSTIWYDWKCKDCQLSLKSDKNGNAKLLKEVANV
Ga0214198_100014940F000684N/AMTLHGYTYQIGDLFTTSKTGVTGRINGFSPISNKVTRVGLTLANGSKRFAMVKTSK
Ga0214198_100014943F000447GGAGMGYIEIFRINEDGAGWVDLSALTSHELFELEIGLFEEGAL
Ga0214198_100014950F045504GGAMNKLSDLCHNIYYVLNEQRDLYHIYTEQLDFFIPSSGLNHLKYGLEAHYTQTEYLLDCSDEELKELGKIRPKRSSIEEVEYQLQRKSFTGEIIKANQLISRLPVFSQSRNRNGKQNIADKRWKNAIKDENPKVLRLLEWFEEEESFIRTKFSNVAWTRGTFAISPCHIYPAGKDRGEDSWTPDKILRDISLVNKCFDKISSSDLQGKHATNAEEAQIAIDYLDQFEWDTLSISRQALYVLLFRRIVQNFYDEYKITDVDLDI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.