Scaffold Ga0214238_1003297

Overview

Basic Information

• Taxon OID: 3300020707
• Scaffold ID: Ga0214238_1003297
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2622
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-D15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029972	Metagenome	186	Y
F058633	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214238_10032975	F029972	GAG	MGKFQQKFSQRQEKELEAEWPLAHRTVGSGNKWEKGDLSTEEQYNISFLVEAKATQAASYSITKKVWDTIKEHAQNRSWLTRPILAIRLYGPTMEKTNWGGERENTPDTLPVELDLICMDKNDFLELYYDYLRLKEKE
Ga0214238_10032977	F058633	GGA	MSFLERTLAAYQNDEPITKYIEEALMKGNIFPEEYPVKVFNKERVFDNMYHPSSDVSAGELQLYYKFHPEERLLLQEERISPTLAMTFQVGSVFHSVVQNLLIHLGFTTIDKVEVKFKNEERMIAGAVDVLELTTPDGEKFLVDIKSTNQLPKEASYQYAMQLRTYQ