NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214177_1028511

Scaffold Ga0214177_1028511


Overview

Basic Information
Taxon OID3300020705 Open in IMG/M
Scaffold IDGa0214177_1028511 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)610
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007405Metagenome351Y
F023091Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0214177_10285111F023091GGAGMALFSKNTLTQVSGFDNQIIAGELVYNQKTFWNLTLATDGTLINLTGVAIDAQIIRREVSNLQDTRYGLSFDIADYVPEPSPVSLTISNRNDTAGFV
Ga0214177_10285112F007405N/AGAQLNVYHADKGQGLPSHSHTFSHSTMCNAGSCLVSLEGRSYTINKNSQPLNLPAGEWHEIEALEDGTVFVNVFAEGKY

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