NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214177_1001431

Scaffold Ga0214177_1001431


Overview

Basic Information
Taxon OID3300020705 Open in IMG/M
Scaffold IDGa0214177_1001431 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4560
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026556Metagenome / Metatranscriptome197Y
F033308Metagenome177Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214177_100143111F033308AGGAMTNAKQITDELIYRMKNTSLNKFLIKREVGPGWLPNGTVPFDVHAKDGIATFTVWAESIQDAEDQVSQYLERDENE
Ga0214177_10014315F026556AGGAGMTSALVKLIFAILLIIIAVAFGPIVGIWSLNTLFPVLHIELTWQTWLAFNCLFGGSIATRFKK
Ga0214177_10014317F070810AGAAGMKEKTFKIEIPWDSQGNNWWNEICGDVVEVFGLPGERYTYHPRYEDMAFHFKSKKDYELCKILLSDKF

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