Scaffold Ga0214177_1001309

Overview

Basic Information

• Taxon OID: 3300020705
• Scaffold ID: Ga0214177_1001309
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4910
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Metamonada → Parabasalia → Trichomonadida → Trichomonadidae → Trichomonas → Trichomonas vaginalis → Trichomonas vaginalis G3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053079	Metagenome / Metatranscriptome	141	Y
F058734	Metagenome / Metatranscriptome	134	Y
F079412	Metagenome	115	N
F091108	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214177_10013093	F058734	N/A	MTLTIIENVKEFTAIEQKSLYNDGADIANGLYYLVADASAFTIQGREVIPNLPALRSLSTTSNIGWVITNFRGNKVAFGSATAP
Ga0214177_10013094	F091108	AGG	MNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPPEGYHQLNTLDEAKNFLHKYVAYIREVWDKQIIENRK
Ga0214177_10013097	F079412	N/A	MINWDTLSLVYSTILDPIYKAKKKRNFVIRIRGVKNGRWNWYNYDSQGGYFVIVPDLRIGQFHRVIIHEFRHFVQDKILHVRISSDYEKLYYHHPIEIDARRFEYKGLHFVMRLYNRIEKQKKVFKKLGKYRE
Ga0214177_10013098	F053079	AGG	MKDISKLIEMGILPDPNYVPRETVANRFGVMVWAHKTAGECQVMTGESFGKAKQYMARPGHRSGIRKYGFRG