Scaffold Ga0214190_1004211

Overview

Basic Information

• Taxon OID: 3300020695
• Scaffold ID: Ga0214190_1004211
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1992
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013275	Metagenome / Metatranscriptome	272	N
F014232	Metagenome / Metatranscriptome	264	N
F030350	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214190_10042111	F014232	AGG	MSQEKPEINSEVITKEGTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVHSVPLINGLISYKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIRLKAIHPDWEMYLEDSKN
Ga0214190_10042112	F030350	GAG	LLVLQPGPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYRLTPTFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKEKTNFEITEVRKTSPYEYKDPREVNFKIPKVKDETKVVTRVRNPTYLDFLYRP
Ga0214190_10042115	F013275	GGA	MDDFINPYKDVKLKTHLLWMTLSTIANYSSAGNISSKYVRAYLAIMVWLLITFNSDRSGAQRLIMAFLYLEFNSIDRIIEAVNHSAIIIKAAMLCMGLSSILVNPEMNYEQAIVLTILLAAAEYIPYQWEIETLIPRAIKYFKIK