Scaffold Ga0214190_1004063

Overview

Basic Information

• Taxon OID: 3300020695
• Scaffold ID: Ga0214190_1004063
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2044
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008991	Metagenome / Metatranscriptome	324	N
F017436	Metagenome / Metatranscriptome	240	N
F017786	Metagenome / Metatranscriptome	238	Y
F057096	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214190_10040632	F017786	N/A	MDKGVKFVMNREEMKSLSAKQILMAREKLGLGEHVLLVNEIFISPISFQNAMEIVRNIKEKVKLRELELQALQT
Ga0214190_10040634	F017436	N/A	MDGQYRKMFRETVITVQRLSISAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKELKDMYYFMDRLKATTFDEWKNFLITGSTEFFDNRF
Ga0214190_10040635	F008991	N/A	MHLTVKITEQVEKKLEVVLKGKYDNKTIWMYYKVSLQLLRDIIENLIACHHTTYPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDKLVSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIQFCEENGWAV
Ga0214190_10040636	F057096	N/A	KAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAVKIALSNRNEEARNRILRELLEKTITKIEALSVRASPSP