Scaffold Ga0214190

Basic Information
Taxon OID	3300020695 Open in IMG/M
Scaffold ID	Ga0214190_1003563 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020695 Open in IMG/M

Scaffold ID

Ga0214190_1003563 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	2236
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2236

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013499	Metagenome / Metatranscriptome	270	N
F014823	Metagenome / Metatranscriptome	259	N
F016116	Metagenome / Metatranscriptome	249	N
F021930	Metagenome / Metatranscriptome	216	N
F022867	Metagenome / Metatranscriptome	212	N
F088321	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214190_10035631	F013499	N/A	MKDIGITISGIKGLIMLLQAHQRELVSKGEPDPSEGSLETARLAIDQLKEKIEAIVGPEESTGAEGFEVEVHESEDQSQT
Ga0214190_10035632	F016116	N/A	MVEKLAKHERLALYNLTEREIDQLEEELVKQFPKEQFAETYIEMWQIYRDTKAIQIYNLIEAKYPGSHNDEKRAGIWFEIATLFSHRLHELVKP
Ga0214190_10035633	F022867	N/A	MELDFQIREQLTSLASNYYNRFWMKSYILSCMVMENAAQNIQLGIIGGKGVTTILEYNIEISRQIDNLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLLH
Ga0214190_10035634	F088321	N/A	MGERVELTPLEYLHGGLAASDKLRIQISNLIKQEFAKSQNLRARMSKIHSSIKINQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI
Ga0214190_10035635	F021930	N/A	MSDQDLRRVTDLLKEVELEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVIKSKKDTVDGIVEIEKSGNRPSFLAIAEKLAVQLSVIEHIISCQSLEQMGELMKIVTSEDYEEAREKIDLRFTK
Ga0214190_10035636	F014823	N/A	MSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRRENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQPIAVAEEKLDLPESLEIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214190_1003563

Overview

Ecosystem & Geography

Associated Families

Sequences