Scaffold Ga0214197_1002778

Overview

Basic Information

• Taxon OID: 3300020694
• Scaffold ID: Ga0214197_1002778
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y
F032250	Metagenome / Metatranscriptome	180	N
F049579	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214197_10027781	F049579	N/A	LVNSLPGGIDYTKLTKCQLIDTVLGHRAELTEQFIFLINALAHGEYDDQYSIWKDEILDVVYQLIRIDTNWRLKVVTKDCGHIIIRHEECTCDEPFHYRTKIERKRVSRPRKRILPTIPQLIEKRDSSVRDLLFMINESIVDYDYPRDNITWVMELRKIIQRILDIDPSWKLECIRVPAQCMKIKREQCNC
Ga0214197_10027782	F015585	N/A	MTKFRLHLYSKRLRIKYRFVKLKEIRMSQKNTESNQRLIKVINHCSRIAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKRNSEVQGKPPSEVKAEPGLSEEEKFFSSPW
Ga0214197_10027783	F016361	N/A	MCKKRELTKEPLIDGVNRPIGERSISILMSKQLVLMALMDTMTITMDPEKGKKVFQEIVSIMKELKNMEARCTC
Ga0214197_10027785	F032250	N/A	MQMCTVEKEKSFLKMQNEGNSSQAEVGRGANTISTQVFKERDTYLQNILQIMEAVKEETVYQDNWLQYAVLHQNLMKLKEMDPNWKLVFYYEGDCIRLKHYSCSC