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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020694 Open in IMG/M |
| Scaffold ID | Ga0214197_1001321 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3255 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010669 | Metagenome / Metatranscriptome | 300 | Y |
| F012769 | Metagenome / Metatranscriptome | 277 | N |
| F014232 | Metagenome / Metatranscriptome | 264 | N |
| F015058 | Metagenome / Metatranscriptome | 257 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214197_10013212 | F015058 | N/A | MDDSWIHTFNSDMMRKDRERLKGQGIVISNLISEGQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPADAVKTLTYNDHESLKQKLGTIAVARASILKRKGLMQFHSLSESGNNPVDLYETEKTIVLMKLEAKLLQLEHLYKSLLEIKPAELKMFQ |
| Ga0214197_10013214 | F010669 | N/A | MELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEVKCRIHAYVAHEQEILAELLNELESEVQTNSENIIVERIKRCFRCIDDIIEYATQFLKQACLIEMRDFTGFYYEIENEAKQTIRQALTIVSTLRRGNLFHLAPSVKGLVIELDYIRILVSRKTLEQVEETLEEYGARRTHTLREIEKLFP |
| Ga0214197_10013215 | F012769 | N/A | MQFQYPKFKVKELVKEKYDPILKEEYQEETAIKIFKASIEVIRQSGNRLTEQHYLPYSPEEKEDAIKEVIVQISEWKNRILNRRQKEKITRIDRALSKKILDMLAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH |
| Ga0214197_10013216 | F014232 | AGG | MSQEKPEINSEVITKEGTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKIDPGWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLQCSEVKRRYQEMLDATSSEESNSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |