Scaffold Ga0214197

Basic Information
Taxon OID	3300020694 Open in IMG/M
Scaffold ID	Ga0214197_1001278 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020694 Open in IMG/M

Scaffold ID

Ga0214197_1001278 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3332
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3332

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026196	Metagenome / Metatranscriptome	198	N
F031758	Metagenome / Metatranscriptome	181	N
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N
F085118	Metagenome / Metatranscriptome	111	N
F105037	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214197_10012781	F085118	N/A	VKTVLLTCGHVVLRNYDCTCDPPFFPLRVREKEFSRLRAKTITINDLIDKRNLLTRKLINTILERVVEESYSQYKLSWVSEVSKIIRQILNIDPGWELKCIKEQFKCLKIEHKVCKCGQQ
Ga0214197_10012782	F026196	N/A	MWPTRMSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLGLWQRRDKLVEELIDLINATKVNKSGADSIKIQEYSKIQSIIEEQREIDPDWHLVIRQQGEGCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIIKSIQETMNAINTNISFDENIGTMMKLYFFIKELRRVEPNRLPCLREVSRNPSKESKA
Ga0214197_10012783	F105037	N/A	MSTYKVVDFTTGAEDEEMVTSHLFHERDLALRGVALILATIRDNTTLEENLGGYKELHKYIQILKKLDPKWKLVLYYIGNCIRLKHYSCDCHSFL
Ga0214197_10012784	F040464	N/A	MNKETRNYKNKVYTFKHRTMNPMVSPEWLRRGYAFVGQTQEHLKDILKELTLKMRTMTDKEIEKDLRKGLKVTGDITLELSRFVRQGLEQKRTFKGLLGTLIETKNWALIKLILEVTKELKERDSSSSLLFSIAKEILRELQRIQAIIPIKELKQMETSLIDIQYWKLTRHLRI
Ga0214197_10012786	F043229	N/A	MTQKGVKLEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIETEAPLSFRALERICDLKKKIKRIDPEWILVNEVKLLEHQVLSQLDTIDHATPWNSARNKLRYIDLCQTINKLKIIHPDWEMDLEDSKKHYLCRCCSCLEKRRMYQQTLDETRLEKATPYKGSRNKFSN
Ga0214197_10012787	F031758	GGA	MSVNKGQEKELLIKNLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHEIISLIDEVNTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPTIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214197_1001278

Overview

Ecosystem & Geography

Associated Families

Sequences