Scaffold Ga0214197

Basic Information
Taxon OID	3300020694 Open in IMG/M
Scaffold ID	Ga0214197_1000971 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020694 Open in IMG/M

Scaffold ID

Ga0214197_1000971 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4232
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4232

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008745	Metagenome / Metatranscriptome	328	N
F028153	Metagenome / Metatranscriptome	192	N
F032254	Metagenome / Metatranscriptome	180	N
F040465	Metagenome / Metatranscriptome	161	N
F042744	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214197_10009713	F028153	N/A	MEVDECGTGARWPPNCEITEQELCFVRRLVNRRSFQTRKRLDDWLRIMEEVVKVLGILYRSSFRLLESNNFKDESILDLLRTVYISAMAEVDVVKGERT
Ga0214197_10009715	F008745	GGA	MSNGYQITEEERDTLICPRLECMGAQELLDVWLLPLVLEVGGILEEAYRTSHQLFERGQGEERILGLLQHKLMTAITELEVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE
Ga0214197_10009716	F040465	N/A	MSDKEVDECAQWPEITEEELSFAENLWNRDSSPDEQRLDDWLRVMEEIVATIGYTYHSSFQLLKSNNLKNESLLEALRGMYIFAMAEVNVAKRKTTLS
Ga0214197_10009717	F032254	N/A	MCVRKVGYLVAEKRFVAIPLLPPSPPPDKDATSSKFVVEIQCSNRACRYHGRRRQQVPLMMQSLAQCARSCGNFSCFYPGCRVIPVLDPSPQLFCVILQA
Ga0214197_10009718	F042744	AGCAG	MESSQVATAVVGPSVYKNVLGMIKQLRKMILKWISDRETCSPSLIQMFEGTKRWFREQVKIHFADSQKRYLQWRWRLAEKMFLQFREGQALTAAPALPTRGKAAKAADLHLDLQRQMGKAANASAKKRQRKRIKVAEPPQLSVIPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214197_1000971

Overview

Ecosystem & Geography

Associated Families

Sequences