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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020694 Open in IMG/M |
| Scaffold ID | Ga0214197_1000807 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5171 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (26.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011134 | Metagenome / Metatranscriptome | 294 | N |
| F017597 | Metagenome / Metatranscriptome | 239 | N |
| F018323 | Metagenome / Metatranscriptome | 235 | N |
| F022147 | Metagenome / Metatranscriptome | 215 | N |
| F024477 | Metagenome / Metatranscriptome | 205 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214197_10008071 | F017597 | N/A | MKIFRLEKSLIKLAIKKKELIKTTKSSKLVLIKTEMITRILIAALRAKHVIAIRFQVNRTNNLLIWEQNPSIS |
| Ga0214197_100080713 | F011134 | N/A | MSTFAKSEENYDSKETLVDTIKTDLISQFKVCVDEINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRIEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK |
| Ga0214197_100080715 | F018323 | N/A | LLKYCHTEYTEMCNTKYNDEIVELIKSLEENSVDLTSAMNTVRVLDELELPLFEHILINQICKDLNAISTEINHDQEDERVFRKIFHKVRALKLKNPEWKFKHRAKKSTYSRKRMIEEERLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRTWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL |
| Ga0214197_10008072 | F024477 | N/A | VSYDIIKNSSKASSFELLIKNITLIEKVEDFYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLMELERLQIQKTNELIENDLNEDL |
| Ga0214197_10008076 | F022147 | GAG | MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKYRIQKSKDIVTLEKVSIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |