Scaffold Ga0214197_1000388

Overview

Basic Information

• Taxon OID: 3300020694
• Scaffold ID: Ga0214197_1000388
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13175
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016117	Metagenome / Metatranscriptome	249	N
F019600	Metagenome / Metatranscriptome	228	N
F021046	Metagenome / Metatranscriptome	220	N
F026810	Metagenome / Metatranscriptome	196	N
F031767	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214197_100038817	F019600	N/A	MYAPDTDTSKLETGYNLEKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0214197_100038818	F031767	GGA	MNNNPINQKKIIVKRLERKPRQNYVKTLASLKGIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTNKNS
Ga0214197_100038820	F026810	N/A	MAASINRRILTMTKEEHVDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSAEFEKIKEKVNDPVLVNKLGVVTNQALVPNPSQTEQNQNSALDLSLPRQ
Ga0214197_10003883	F016117	N/A	MDSIHIELSPRLGLLIAAWRNFFTRLHNQSILTDNGFQYLLALLVDKLQEALDSEFYPLVLDWLKETLPKVMRCRGTVNLINQVPAHLWTSNHIFRHDYFVCLERRANRLSIPS
Ga0214197_10003886	F021046	GAG	METNFVTNVHEVVYASFLSKDCPTNEVRILTKFYKVSFVVFKAGNVSYNAIMAANTIITDFFVSHHRLFAREIALEFVENILTLLFSYDGFWDFVNRLNIHFFYLSYRPQILQILSYHMSLTYGSEHYLEVYRLLPPYVSGAEDFSRERGKFFCFVTKRKEFFLFLFRIGF