Scaffold Ga0214223_1000754

Overview

Basic Information

• Taxon OID: 3300020690
• Scaffold ID: Ga0214223_1000754
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4210
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054608	Metagenome	139	N
F074376	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214223_10007542	F054608	N/A	MKSYSDIMPELIVLQGHGPKTKAGRKGAAFRHHYRGKECLDIHLLKPAQAWAQMATDHGPGSQQVLGVGGAPDAAADGEWVTYPYREAHPILRWLPSKLAEWIGDNYGAALGIPPKHHADGWTVGELNAILDNNLVPGTHGHLRTFGCIQWESEVFNGRPKARCYPFDLPGHRFRGKNPQVCT
Ga0214223_10007544	F074376	N/A	LKVCSNLGQVGDKERELKHKLRPRNAFLQAEGLNLPAACPREELHQFLIGLYGEYVIPSSMHKFIQVLRGKELYLGQGDTKRPLVTDQMLRAVWARLRDRLSSLDSPSSMVEVTTAYATHFTDMYVDKHTGKHMTGDRVRILLLTLPFLLRDLIAPEVWP