NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214210_1001962

Scaffold Ga0214210_1001962


Overview

Basic Information
Taxon OID3300020689 Open in IMG/M
Scaffold IDGa0214210_1001962 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2905
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055421Metagenome / Metatranscriptome138N
F055422Metagenome / Metatranscriptome138N
F065414Metagenome / Metatranscriptome127N
F069678Metagenome / Metatranscriptome123N
F093242Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0214210_10019622F065414N/AMSEPEVVINLNNLEELNIQKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKERFKIIFKVLKRIKAMEPDNHLNLASYIVSRNGV
Ga0214210_10019623F093242N/AMEYSNPEKDKVIDIIQDIMNSIDTNTNYNNNYENFLRMYAAIRKLKTKEPGLKFKVSNIPTSENNYFFRKRNEN
Ga0214210_10019624F069678N/AMSNQEQLAEGTSPTETLVDTVKTELIYRFKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENEHLDDKINTGTAHTDR
Ga0214210_10019626F055422AGGMNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHIRNASLPNRDRNPPDRNRDSLDIDNYSETEPLITEV
Ga0214210_10019628F055421N/AMEEFTNPYKETNIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRGLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY
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