Scaffold Ga0214210_1001777

Overview

Basic Information

• Taxon OID: 3300020689
• Scaffold ID: Ga0214210_1001777
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3141
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F027744	Metagenome / Metatranscriptome	193	N
F028416	Metagenome / Metatranscriptome	191	N
F031075	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214210_10017772	F027744	N/A	MNSIVRESKNNFYEPDISNTGQRVNPELPLTIAERDAVARGVVRFNNQRQYRKRRLDNLLEALDTRHGTVYDPGNVEILIEVFNTVGLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL
Ga0214210_10017773	F028416	N/A	LRKKGDSMNEQPINGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC
Ga0214210_10017776	F031075	N/A	MSQEKSTSVSEIVNRKENPEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIRGIDPNWILADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK
Ga0214210_10017777	F016494	N/A	MSQKDNSGEEITVDGSTELGQLVKSILHTVDELFPPKPEFSFEDMMVQFYTLKNKIKKIDSNWKFENTDISYMFEILKLLDAINIEEIPDLQQNAKVCQRLLHRVRIMRQVNPLWSLDVEGIVKFLYPTLNTQPN