Scaffold Ga0214210_1001072

Overview

Basic Information

• Taxon OID: 3300020689
• Scaffold ID: Ga0214210_1001072
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4477
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026196	Metagenome / Metatranscriptome	198	N
F031758	Metagenome / Metatranscriptome	181	N
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N
F096608	Metagenome / Metatranscriptome	104	N
F105037	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214210_10010722	F031758	N/A	MSVNKSQEKELLIKDLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHKVISLIDEVNTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPIIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK
Ga0214210_10010723	F043229	N/A	MTQKGVKLEIETIEECGCEPHECHCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICDLKKKIKRIDPEWILVNEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIELCQSINKLKIIHPDWEMDLEDSKNHYICRCCSCLEKRKMYQQTLDETRSEKSTPYKESRNKFSN
Ga0214210_10010724	F096608	N/A	MNPKIELIKEILQIIDTLTPMEIKTIPESVVLRLYQLKKRVKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRINSLWRMDTSLVVEFINSTPLKEEREKEKDELPENLVDKEDLSP
Ga0214210_10010725	F040464	N/A	MDKKTRSYKNKVYTFKYKTTNPMVSLEWLRRGYAFVGQTQEHLKDTLKELTLKMRTMTDKEIEKDLRKGLKITGDITLELSRFVRQGLEQKRTFKGLFGTLIETKNWALIKLILEVTEELKERNSSSPLLFSIAKEILRELQRIQAIITIKELKQMETSLIDIQYWKLTRHLRI
Ga0214210_10010726	F105037	N/A	MSTYKIVDFTTGAEDEEMVTSHLFHERDLALRGVTLILATIRDNTTLEENLGGYKELHKYIQILKKLDPKWKLVLYYIGNCIRLKHYSCDCHSFL
Ga0214210_10010727	F026196	N/A	MWPTRMSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLGLWQRRDKLVEELINLINATKVNKSGADSIKIQEYSKIQSIIEEQREIDPDWHLVIRQQGEGCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFIKELRRVEPNRLPCLREVSRNSSKESKA